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Comprehensive profiling of EBV gene expression in nasopharyngeal carcinoma through paired-end transcriptome sequencing

Lijuan Hu,Zhirui Lin,Yanheng Wu,Juqin Dong,Bo Zhao,Yanbing Cheng,Peiyu Huang,Lihua Xu,Tianliang Xia,Dan Xiong,Hongbo Wang,Manzhi Li,Ling Guo,Elliott Kieff,Yixin Zeng,Qian Zhong,Musheng Zeng

Frontiers of Medicine 2016, Volume 10, Issue 1,   Pages 61-75 doi: 10.1007/s11684-016-0436-0

Abstract:

The latent expression pattern of Epstein-Barr Virus (EBV) genes in nasopharyngeal carcinoma (NPC)has been extensively investigated, and the expression of several lytic genes in NPC has been reportedIn addition to the transcripts restricted to type II latency infection, the type III latency EBNA3s genes and a substantial number of lytic genes, such as BZLF1, BRLF1II latency genes but also to type III latency and lytic genes.

Keywords： Epstein-Barr virus     paired-end transcriptome sequencing     latency genes     lytic genes     nasopharyngeal carcinoma    

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Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 1,   Pages 4-4 doi: 10.1007/s11783-021-1438-y

Abstract: Mariculture systems have been observed to host microplastics and antibiotic resistance genes (ARGs).However, more information on proliferation of ARGs and metal resistance genes (MRGs) in mariculture system

Keywords： Antibiotic resistance genes     Metal resistance genes     Metagenomic analysis     Microplastics     Mariculture    

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ShortTail: taming tail latency for erasure-code-based in-memory systems Research Article

Yun TENG, Zhiyue LI, Jing HUANG, Guangyan ZHANG

Frontiers of Information Technology & Electronic Engineering 2022, Volume 23, Issue 11,   Pages 1646-1657 doi: 10.1631/FITEE.2100566

Abstract: EC-enabled in-memory storage system called ShortTail, which can achieve consistent performance and low latencyShortTail can reduce the P99 by up to 63.77%; it also brings significant improvements in the median latencyand average latency.

Keywords： Erasure code     In-memory system     Node fail-slow     Small write     Tail latency    

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Distribution and removal of antibiotic resistance genes during anaerobic sludge digestion with alkaline

Mengli Wang, Ruying Li, Qing Zhao

Frontiers of Environmental Science & Engineering 2019, Volume 13, Issue 3, doi: 10.1007/s11783-019-1127-2

Abstract:

Sludge digestion is critical to control the spread of ARGs from wastewater to soil.

Fate of ARGs in three pretreatment-AD processes was investigated.

UP was more efficient for ARGs removal than AP and THP in pretreatment-AD process.

The total ARGs concentration showed significant correlation with 16S rRNA gene.

The bacteria carrying ARGs could be mainly affiliated with Proteobacteria.

Keywords： Tetracycline resistance genes     Sulfonamide resistance genes     16S rRNA gene     Sludge pretreatment     Anaerobic    

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Environmental effects and risk control of antibiotic resistance genes in the organic solid waste aerobic

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 6, doi: 10.1007/s11783-021-1415-5

Abstract:

• ARGs were detected in livestock manure, sludge, food waste and fermentation dregs.

Keywords： Antibiotic resistance genes     Organic solid waste     Aerobic composting     Livestock manure     Sludge    

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ultraviolet/chlorine process on microbial community structure, typical pathogens, and antibiotic resistance genes

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 8, doi: 10.1007/s11783-022-1521-z

Abstract:

• UV/chlorine can effectively remove VBNC pathogens, ARGs and MGEs in reclaimed water.

Keywords： UV/chlorine process     Pathogen     Antibiotic resistance genes     High-throughput qPCR     Reclaimed water    

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Distribution of antibiotic resistance genes and their association with bacteria and viruses in decentralized

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 3, doi: 10.1007/s11783-021-1469-4

Abstract:

• Distribution of ARGs in decentralized sewage facilities were investigated.

Keywords： Decentralized sewage treatment facilities     Antibiotic resistance genes     Virus     Metagenomics     Network    

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Research progress in pathogenic genes of hereditary non-syndromic mid-frequency deafness

Wenjun Xia,Fei Liu,Duan Ma

Frontiers of Medicine 2016, Volume 10, Issue 2,   Pages 137-142 doi: 10.1007/s11684-016-0449-8

Abstract: Only four genetic mid-frequency deafness genes, namely, DFNA10 (EYA4), DFNA8/12 (TECTA)This review summarizes the research progress of the four genes to draw attention to mid-frequency deafnessgenes.

Keywords： hereditary non-syndromic hearing loss     mid-frequency hearing loss     deafness genes    

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Antibiotic resistance genes in manure-amended paddy soils across eastern China: Occurrence and influencing

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 7, doi: 10.1007/s11783-021-1499-y

Abstract:

• Manure fertilization resulted in antibiotic residues and increased metal contents.

Keywords： Pig manure     Antibiotics     Metals     Antibiotic resistance genes     Paddy fields    

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Effects of dwarfing genes on water use efficiency of bread wheat

Jiakun YAN, Suiqi ZHANG

Frontiers of Agricultural Science and Engineering 2017, Volume 4, Issue 2,   Pages 126-134 doi: 10.15302/J-FASE-2017134

Abstract: advances in grain yields under rainfed conditions have been achieved with the introduction of dwarfing genesA thorough understanding of the effects of different dwarfing genes on root growth, coleoptile length, grain yields and water using efficiency (WUE) will provide opportunities to select appropriate genesThis review focuses on the mechanism involved in genes that reduce plant height and affect root and, and suggests that for rainfed and irrigation-limited environments, combining GAR and GAI dwarfing genes

Keywords： coleoptile length     wheat     dwarfing genes     grain yield     root     water use efficiency    

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Degradation of extracellular genomic, plasmid DNA and specific antibiotic resistance genes by chlorination

Menglu Zhang, Sheng Chen, Xin Yu, Peter Vikesland, Amy Pruden

Frontiers of Environmental Science & Engineering 2019, Volume 13, Issue 3, doi: 10.1007/s11783-019-1124-5

Abstract:

Extracellular DNA structure damaged by chlorination was characterized.

Integrity of extracellular ARG genetic information after chlorination was determined.

Typical chlorine doses will likely effectively diminish extracellular DNA and ARGs.

Plasmid DNA/ARGs were less readily broken down than genomic DNA.

The Bioanalyzer methodology effectively documented damage incurred to DNA.

Keywords： Antibiotic resistance     Antibiotic resistance genes (ARGs)     Extracellular DNA/ARGs     Chlorination    

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Design of tandem genes cluster for isoflavone engineering

Xunli XIA PhD , Guangxiao YANG PhD , Guangyuan HE PhD ,

Frontiers of Medicine 2009, Volume 3, Issue 3,   Pages 292-296 doi: 10.1007/s11684-009-0057-y

Abstract: In this paper, a universal effective novel method of constructing tandem genes cluster for isoflavoneA tandem genes cluster () of secondary metabolites of plant isoflavones was constructed by using the

Keywords： isoflavones engineering     secondary metabolism     tandem genes cluster    

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with sulfamethoxazole and norfloxacin: Dynamics of microbial communities and evolution of resistance genes

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 5, doi: 10.1007/s11783-020-1342-x

Abstract:

• SMX addition had negative effect on acetoclastic methanogens in mesophilic AD.

Keywords： Pig manure     Antibiotics     Anaerobic digestion     Resistance genes     Microbial community    

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Optimized determination of airborne tetracycline resistance genes in laboratory atmosphere

Lu Song, Can Wang, Yizhu Wang

Frontiers of Environmental Science & Engineering 2020, Volume 14, Issue 6, doi: 10.1007/s11783-020-1274-5

Abstract: Providing research basis to control airborne ARGs of a laboratory atmosphere Antibiotic resistance genes

Keywords： Airborne tetracycline resistance genes     Filter sampling     Capture loading     Membrane pretreatment     Indoor laboratory    

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Mitigating microbiological risks of potential pathogens carrying antibiotic resistance genes and virulence

Frontiers of Environmental Science & Engineering 2023, Volume 17, Issue 7, doi: 10.1007/s11783-023-1682-4

Abstract:

● Abundance of MAGs carrying ARG-VF pairs unchanged in rivers after WWTP upgrade.

Keywords： Wastewater treatment plant upgrade     Antibiotic resistance genes (ARGs)     Virulence factors (VFs)     Gene    

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Title Author Date Type Operation

Comprehensive profiling of EBV gene expression in nasopharyngeal carcinoma through paired-end transcriptome sequencing

Lijuan Hu,Zhirui Lin,Yanheng Wu,Juqin Dong,Bo Zhao,Yanbing Cheng,Peiyu Huang,Lihua Xu,Tianliang Xia,Dan Xiong,Hongbo Wang,Manzhi Li,Ling Guo,Elliott Kieff,Yixin Zeng,Qian Zhong,Musheng Zeng

Journal Article

Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

Journal Article

ShortTail: taming tail latency for erasure-code-based in-memory systems

Yun TENG, Zhiyue LI, Jing HUANG, Guangyan ZHANG

Journal Article

Distribution and removal of antibiotic resistance genes during anaerobic sludge digestion with alkaline

Mengli Wang, Ruying Li, Qing Zhao

Journal Article

Environmental effects and risk control of antibiotic resistance genes in the organic solid waste aerobic

Journal Article

ultraviolet/chlorine process on microbial community structure, typical pathogens, and antibiotic resistance genes

Journal Article

Distribution of antibiotic resistance genes and their association with bacteria and viruses in decentralized

Journal Article

Research progress in pathogenic genes of hereditary non-syndromic mid-frequency deafness

Wenjun Xia,Fei Liu,Duan Ma

Journal Article

Antibiotic resistance genes in manure-amended paddy soils across eastern China: Occurrence and influencing

Journal Article

Effects of dwarfing genes on water use efficiency of bread wheat

Jiakun YAN, Suiqi ZHANG

Journal Article

Degradation of extracellular genomic, plasmid DNA and specific antibiotic resistance genes by chlorination

Menglu Zhang, Sheng Chen, Xin Yu, Peter Vikesland, Amy Pruden

Journal Article

Design of tandem genes cluster for isoflavone engineering

Xunli XIA PhD , Guangxiao YANG PhD , Guangyuan HE PhD ,

Journal Article

with sulfamethoxazole and norfloxacin: Dynamics of microbial communities and evolution of resistance genes

Journal Article

Optimized determination of airborne tetracycline resistance genes in laboratory atmosphere

Lu Song, Can Wang, Yizhu Wang

Journal Article

Mitigating microbiological risks of potential pathogens carrying antibiotic resistance genes and virulence

Journal Article